J3_8FR8_006

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8FR8|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1169

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FR8|1|A|C|1421
8FR8|1|A|A|1422
8FR8|1|A|A|1423
8FR8|1|A|G|1424
*
8FR8|1|A|C|1823
8FR8|1|A|C|1824
8FR8|1|A|C|1825
8FR8|1|A|A|1826
8FR8|1|A|A|1827
8FR8|1|A|A|1828
8FR8|1|A|C|1829
*
8FR8|1|A|G|1838
8FR8|1|A|U|1839
8FR8|1|A|G|1840

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 0

50S ribosomal protein L34