J3_8FR8_009
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8FR8|1|A|C|2558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FR8_009 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1788
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8FR8|1|A|C|2519
8FR8|1|A|U|2520
8FR8|1|A|C|2521
*
8FR8|1|A|G|2545
8FR8|1|A|A|2546
8FR8|1|A|G|2547
*
8FR8|1|A|C|2556
8FR8|1|A|A|2557
8FR8|1|A|C|2558
8FR8|1|A|A|2559
8FR8|1|A|A|2560
8FR8|1|A|G|2561
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain 4
- 50S ribosomal protein L27
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L18
- Chain E
- Transfer RNA; tRNA
- Chain O
- 50S ribosomal protein L5
Coloring options: