J3_8FR8_013
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CUAG*CGUAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8FR8|1|a|U|853
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FR8_013 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1318
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8FR8|1|a|C|806
8FR8|1|a|U|807
8FR8|1|a|A|808
8FR8|1|a|G|809
*
8FR8|1|a|C|839
8FR8|1|a|G|840
8FR8|1|a|U|841
8FR8|1|a|A|842
8FR8|1|a|G|843
*
8FR8|1|a|C|850
8FR8|1|a|A|851
8FR8|1|a|U|852
8FR8|1|a|U|853
8FR8|1|a|A|854
8FR8|1|a|A|855
8FR8|1|a|G|856
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S2
Coloring options: