J3_8FR8_027

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8FR8|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_027 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1417

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8FR8|1|A|U|1459
8FR8|1|A|C|1460
8FR8|1|A|G|1461
8FR8|1|A|G|1462
8FR8|1|A|G|1463
8FR8|1|A|A|1464
8FR8|1|A|C|1465
*
8FR8|1|A|G|1496
8FR8|1|A|A|1497
8FR8|1|A|C|1498
8FR8|1|A|A|1499
8FR8|1|A|A|1500
*
8FR8|1|A|U|1517
8FR8|1|A|A|1518

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 0

50S ribosomal protein L34

Chain Z

50S ribosomal protein L23