J3_8FR8_035

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUUGACAU*GCAG*CUUAUG

Length

18 nucleotides

Bulged bases

8FR8|1|a|U|1193, 8FR8|1|a|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_035 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1844

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FR8|1|a|U|972
8FR8|1|a|U|973
8FR8|1|a|U|974
8FR8|1|a|G|975
8FR8|1|a|A|976
8FR8|1|a|C|977
8FR8|1|a|A|978
8FR8|1|a|U|979
*
8FR8|1|a|G|1024
8FR8|1|a|C|1025
8FR8|1|a|A|1026
8FR8|1|a|G|1027
*
8FR8|1|a|C|1191
8FR8|1|a|U|1192
8FR8|1|a|U|1193
8FR8|1|a|A|1194
8FR8|1|a|U|1195
8FR8|1|a|G|1196

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain 9

30S ribosomal protein S14