J3_8FRU_002
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGAG*CGCCG*UCGGAG
- Length
- 15 nucleotides
- Bulged bases
- 8FRU|1|1|A|611
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_002 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.2043
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8FRU|1|1|C|543
8FRU|1|1|G|544
8FRU|1|1|A|545
8FRU|1|1|G|546
*
8FRU|1|1|C|578
8FRU|1|1|G|579
8FRU|1|1|C|580
8FRU|1|1|C|581
8FRU|1|1|G|582
*
8FRU|1|1|U|607
8FRU|1|1|C|608
8FRU|1|1|G|609
8FRU|1|1|G|610
8FRU|1|1|A|611
8FRU|1|1|G|612
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain R
- 60S ribosomal protein eL19
- Chain g
- 60S ribosomal protein eL34
- Chain j
- 60S ribosomal protein eL37
- Chain p
- 60S ribosomal protein eL43
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