J3_8FRU_007
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCUG*CUCAC*GGACCCG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_007 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.1389
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FRU|1|1|C|1918
8FRU|1|1|C|1919
8FRU|1|1|U|1920
8FRU|1|1|G|1921
*
8FRU|1|1|C|1996
8FRU|1|1|U|1997
8FRU|1|1|C|1998
8FRU|1|1|A|1999
8FRU|1|1|C|2000
*
8FRU|1|1|G|2013
8FRU|1|1|G|2014
8FRU|1|1|A|2015
8FRU|1|1|C|2016
8FRU|1|1|C|2017
8FRU|1|1|C|2018
8FRU|1|1|G|2019
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain G
- 60S ribosomal protein eL8
- Chain N
- 60S ribosomal protein eL15
- Chain i
- 60S ribosomal protein eL36
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