J3_8FRU_008
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8FRU|1|1|C|2125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_008 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0963
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FRU|1|1|C|2086
8FRU|1|1|U|2087
8FRU|1|1|C|2088
*
8FRU|1|1|G|2112
8FRU|1|1|A|2113
8FRU|1|1|G|2114
*
8FRU|1|1|C|2123
8FRU|1|1|A|2124
8FRU|1|1|C|2125
8FRU|1|1|A|2126
8FRU|1|1|A|2127
8FRU|1|1|G|2128
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein uL18
- Chain J
- 60S ribosomal protein uL5
- Chain T
- 60S ribosomal protein eL21
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