J3_8FRU_013
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGAUAGCGGACCAAGUAG*CGAACG*CUCG
- Length
- 28 nucleotides
- Bulged bases
- 8FRU|1|1|U|292, 8FRU|1|1|C|300, 8FRU|1|1|A|301, 8FRU|1|4|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_013 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1292
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8FRU|1|1|C|289
8FRU|1|1|G|290
8FRU|1|1|A|291
8FRU|1|1|U|292
8FRU|1|1|A|293
8FRU|1|1|G|294
8FRU|1|1|C|295
8FRU|1|1|G|296
8FRU|1|1|G|297
8FRU|1|1|A|298
8FRU|1|1|C|299
8FRU|1|1|C|300
8FRU|1|1|A|301
8FRU|1|1|A|302
8FRU|1|1|G|303
8FRU|1|1|U|304
8FRU|1|1|A|305
8FRU|1|1|G|306
*
8FRU|1|1|C|313
8FRU|1|1|G|314
8FRU|1|1|A|315
8FRU|1|1|A|316
8FRU|1|1|C|317
8FRU|1|1|G|318
*
8FRU|1|4|C|21
8FRU|1|4|U|22
8FRU|1|4|C|23
8FRU|1|4|G|24
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain Y
- 60S ribosomal protein uL24
- Chain j
- 60S ribosomal protein eL37
- Chain l
- 60S ribosomal protein eL39
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