J3_8FRU_015
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUGAAAAGGACG*CCGCUCAAAAGACC*GC
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_015 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.2234
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8FRU|1|1|G|319
8FRU|1|1|U|320
8FRU|1|1|G|321
8FRU|1|1|A|322
8FRU|1|1|A|323
8FRU|1|1|A|324
8FRU|1|1|A|325
8FRU|1|1|G|326
8FRU|1|1|G|327
8FRU|1|1|A|328
8FRU|1|1|C|329
8FRU|1|1|G|330
*
8FRU|1|1|C|339
8FRU|1|1|C|340
8FRU|1|1|G|341
8FRU|1|1|C|342
8FRU|1|1|U|343
8FRU|1|1|C|344
8FRU|1|1|A|345
8FRU|1|1|A|346
8FRU|1|1|A|347
8FRU|1|1|A|348
8FRU|1|1|G|349
8FRU|1|1|A|350
8FRU|1|1|C|351
8FRU|1|1|C|352
*
8FRU|1|4|G|19
8FRU|1|4|C|20
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain P
- 60S ribosomal protein uL22
- Chain Y
- 60S ribosomal protein uL24
- Chain l
- 60S ribosomal protein eL39
Coloring options: