J3_8FRU_017
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UCGGGC*GGGAG*CA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_017 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1798
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8FRU|1|1|U|1208
8FRU|1|1|C|1209
8FRU|1|1|G|1210
8FRU|1|1|G|1211
8FRU|1|1|G|1212
8FRU|1|1|C|1213
*
8FRU|1|1|G|1262
8FRU|1|1|G|1263
8FRU|1|1|G|1264
8FRU|1|1|A|1265
8FRU|1|1|G|1266
*
8FRU|1|1|C|1283
8FRU|1|1|A|1284
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain X
- 60S ribosomal protein uL23
- Chain g
- 60S ribosomal protein eL34
- Chain k
- 60S ribosomal protein eL38
- Chain l
- 60S ribosomal protein eL39
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