J3_8FRU_018
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_018 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1102
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FRU|1|1|C|1318
8FRU|1|1|G|1319
8FRU|1|1|A|1320
8FRU|1|1|C|1321
8FRU|1|1|G|1322
*
8FRU|1|1|C|1432
8FRU|1|1|C|1433
*
8FRU|1|1|G|1437
8FRU|1|1|A|1438
8FRU|1|1|A|1439
8FRU|1|1|A|1440
8FRU|1|1|A|1441
8FRU|1|1|G|1442
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain g
- 60S ribosomal protein eL34
- Chain p
- 60S ribosomal protein eL43
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