J3_8FRU_023
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GC*GAGACGC*GGCCC
- Length
- 14 nucleotides
- Bulged bases
- 8FRU|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_023 not in the Motif Atlas
- Geometric match to J3_5TBW_071
- Geometric discrepancy: 0.1127
- The information below is about J3_5TBW_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8FRU|1|4|G|44
8FRU|1|4|C|45
*
8FRU|1|4|G|58
8FRU|1|4|A|59
8FRU|1|4|G|60
8FRU|1|4|A|61
8FRU|1|4|C|62
8FRU|1|4|G|63
8FRU|1|4|C|64
*
8FRU|1|4|G|95
8FRU|1|4|G|96
8FRU|1|4|C|97
8FRU|1|4|C|98
8FRU|1|4|C|99
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain X
- 60S ribosomal protein uL23
- Chain h
- 60S ribosomal protein uL29
- Chain j
- 60S ribosomal protein eL37
- Chain l
- 60S ribosomal protein eL39
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