J3_8FTO_013

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8FTO|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FTO_013 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.116

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FTO|1|a|C|1306
8FTO|1|a|A|1307
8FTO|1|a|A|1308
8FTO|1|a|G|1309
*
8FTO|1|a|C|1605
8FTO|1|a|C|1606
8FTO|1|a|C|1607
8FTO|1|a|A|1608
8FTO|1|a|A|1609
8FTO|1|a|A|1610
8FTO|1|a|C|1611
*
8FTO|1|a|G|1620
8FTO|1|a|U|1621
8FTO|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34