J3_8FZD_013
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZD_013 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FZD|1|a|U|943
8FZD|1|a|G|944
8FZD|1|a|G|945
8FZD|1|a|A|946
*
8FZD|1|a|U|1235
8FZD|1|a|A|1236
8FZD|1|a|C|1237
*
8FZD|1|a|G|1337
8FZD|1|a|G|1338
8FZD|1|a|A|1339
8FZD|1|a|A|1340
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
- Chain x
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: