J3_8FZD_037

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FZD|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZD_037 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1398

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FZD|1|a|C|990
8FZD|1|a|U|991
8FZD|1|a|U|992
8FZD|1|a|G|993
8FZD|1|a|A|994
8FZD|1|a|C|995
8FZD|1|a|A|996
8FZD|1|a|U|997
*
8FZD|1|a|A|1044
8FZD|1|a|C|1045
8FZD|1|a|A|1046
8FZD|1|a|G|1047
*
8FZD|1|a|C|1210
8FZD|1|a|U|1211
8FZD|1|a|U|1212
8FZD|1|a|A|1213
8FZD|1|a|C|1214
8FZD|1|a|G|1215

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain w

Peptide chain release factor 1