J3_8FZF_005
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 8FZF|1|A|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZF_005 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.2354
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_71677.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FZF|1|A|C|1306
8FZF|1|A|A|1307
8FZF|1|A|A|1308
8FZF|1|A|G|1309
*
8FZF|1|A|C|1605
8FZF|1|A|C|1606
8FZF|1|A|C|1607
8FZF|1|A|A|1608
8FZF|1|A|A|1609
8FZF|1|A|A|1610
8FZF|1|A|C|1611
*
8FZF|1|A|G|1620
8FZF|1|A|U|1621
8FZF|1|A|G|1622
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
Coloring options: