J3_8FZG_034

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FZG|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZG_034 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1494

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FZG|1|a|C|990
8FZG|1|a|U|991
8FZG|1|a|U|992
8FZG|1|a|G|993
8FZG|1|a|A|994
8FZG|1|a|C|995
8FZG|1|a|A|996
8FZG|1|a|U|997
*
8FZG|1|a|A|1044
8FZG|1|a|C|1045
8FZG|1|a|A|1046
8FZG|1|a|G|1047
*
8FZG|1|a|C|1210
8FZG|1|a|U|1211
8FZG|1|a|U|1212
8FZG|1|a|A|1213
8FZG|1|a|C|1214
8FZG|1|a|G|1215

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain w

Peptide chain release factor 1