J3_8FZJ_025

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZJ_025 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1062

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8FZJ|1|A|G|1424
8FZJ|1|A|G|1425
8FZJ|1|A|G|1426
8FZJ|1|A|A|1427
8FZJ|1|A|C|1428
8FZJ|1|A|G|1429
*
8FZJ|1|A|C|1564
8FZJ|1|A|C|1565
*
8FZJ|1|A|G|1568
8FZJ|1|A|A|1569
8FZJ|1|A|A|1570
8FZJ|1|A|A|1571
8FZJ|1|A|A|1572
8FZJ|1|A|G|1573
8FZJ|1|A|C|1574

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2