J3_8G29_011
3D structure
- PDB id
- 8G29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8G29|1|1a|U|871, 8G29|1|1a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G29_011 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0556
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8G29|1|1a|C|826
8G29|1|1a|U|827
8G29|1|1a|A|828
8G29|1|1a|G|829
*
8G29|1|1a|C|857
8G29|1|1a|G|858
8G29|1|1a|A|859
8G29|1|1a|A|860
8G29|1|1a|G|861
*
8G29|1|1a|C|868
8G29|1|1a|G|869
8G29|1|1a|U|870
8G29|1|1a|U|871
8G29|1|1a|A|872
8G29|1|1a|A|873
8G29|1|1a|G|874
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1h
- 30S ribosomal protein S8
Coloring options: