3D structure

PDB id
8G29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
8G29|1|1a|U|1240, 8G29|1|1a|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G29_019 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0927
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8G29|1|1a|C|1237
8G29|1|1a|A|1238
8G29|1|1a|A|1239
8G29|1|1a|U|1240
8G29|1|1a|G|1241
*
8G29|1|1a|C|1296
8G29|1|1a|C|1297
8G29|1|1a|C|1298
8G29|1|1a|A|1299
8G29|1|1a|G|1300
8G29|1|1a|U|1301
8G29|1|1a|U|1302
8G29|1|1a|C|1303
*
8G29|1|1a|G|1334
8G29|1|1a|C|1335
8G29|1|1a|C|1336
8G29|1|1a|G|1337

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1m
30S ribosomal protein S13
Chain 1u
30S ribosomal protein Thx

Coloring options:


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