J3_8G29_038

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8G29|1|1A|U|504, 8G29|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G29_038 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0389

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8G29|1|1A|G|30
8G29|1|1A|C|31
*
8G29|1|1A|G|474
8G29|1|1A|U|475
8G29|1|1A|G|476
8G29|1|1A|A|477
8G29|1|1A|A|478
8G29|1|1A|A|479
8G29|1|1A|A|480
8G29|1|1A|G|481
8G29|1|1A|A|482
8G29|1|1A|A|483
8G29|1|1A|C|484
*
8G29|1|1A|G|496
8G29|1|1A|A|497
8G29|1|1A|G|498
8G29|1|1A|U|499
8G29|1|1A|G|500
8G29|1|1A|A|501
8G29|1|1A|A|502
8G29|1|1A|A|503
8G29|1|1A|U|504
8G29|1|1A|A|505
8G29|1|1A|G|506
8G29|1|1A|A|507
8G29|1|1A|G|508
8G29|1|1A|C|509
8G29|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24