J3_8G29_053

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8G29|1|1a|U|1212, 8G29|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G29_053 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1468

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8G29|1|1a|C|990
8G29|1|1a|U|991
8G29|1|1a|U|992
8G29|1|1a|G|993
8G29|1|1a|A|994
8G29|1|1a|C|995
8G29|1|1a|A|996
8G29|1|1a|U|997
*
8G29|1|1a|A|1044
8G29|1|1a|C|1045
8G29|1|1a|A|1046
8G29|1|1a|G|1047
*
8G29|1|1a|C|1210
8G29|1|1a|U|1211
8G29|1|1a|U|1212
8G29|1|1a|A|1213
8G29|1|1a|C|1214
8G29|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z