3D structure

PDB id
8G2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
8G2B|1|1a|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G2B_019 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0876
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8G2B|1|1a|C|1237
8G2B|1|1a|A|1238
8G2B|1|1a|A|1239
8G2B|1|1a|U|1240
8G2B|1|1a|G|1241
*
8G2B|1|1a|C|1296
8G2B|1|1a|C|1297
8G2B|1|1a|C|1298
8G2B|1|1a|A|1299
8G2B|1|1a|G|1300
8G2B|1|1a|U|1301
8G2B|1|1a|U|1302
8G2B|1|1a|C|1303
*
8G2B|1|1a|G|1334
8G2B|1|1a|C|1335
8G2B|1|1a|C|1336
8G2B|1|1a|G|1337

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1m
30S ribosomal protein S13
Chain 1u
30S ribosomal protein Thx

Coloring options:


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