J3_8G2B_065

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

8G2B|1|2A|G|2833, 8G2B|1|2A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_065 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1282

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8G2B|1|2A|C|2814
8G2B|1|2A|C|2815
*
8G2B|1|2A|G|2831
8G2B|1|2A|U|2832
8G2B|1|2A|G|2833
8G2B|1|2A|G|2834
8G2B|1|2A|A|2835
8G2B|1|2A|U|2836
*
8G2B|1|2A|A|2882
8G2B|1|2A|A|2883
8G2B|1|2A|U|2884
8G2B|1|2A|C|2885
8G2B|1|2A|G|2886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17