J3_8G2C_026

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8G2C|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2C_026 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0718

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8G2C|1|2a|C|826
8G2C|1|2a|U|827
8G2C|1|2a|A|828
8G2C|1|2a|G|829
*
8G2C|1|2a|C|857
8G2C|1|2a|G|858
8G2C|1|2a|A|859
8G2C|1|2a|A|860
8G2C|1|2a|G|861
*
8G2C|1|2a|C|868
8G2C|1|2a|G|869
8G2C|1|2a|U|870
8G2C|1|2a|U|871
8G2C|1|2a|A|872
8G2C|1|2a|A|873
8G2C|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8