J3_8G2D_034

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

8G2D|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2D_034 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.0959

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8G2D|1|2a|C|1237
8G2D|1|2a|A|1238
8G2D|1|2a|A|1239
8G2D|1|2a|U|1240
8G2D|1|2a|G|1241
*
8G2D|1|2a|C|1296
8G2D|1|2a|C|1297
8G2D|1|2a|C|1298
8G2D|1|2a|A|1299
8G2D|1|2a|G|1300
8G2D|1|2a|U|1301
8G2D|1|2a|U|1302
8G2D|1|2a|C|1303
*
8G2D|1|2a|G|1334
8G2D|1|2a|C|1335
8G2D|1|2a|C|1336
8G2D|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx