J3_8G2D_056

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8G2D|1|2A|U|448, 8G2D|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2D_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0751

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8G2D|1|2A|C|32
8G2D|1|2A|U|33
8G2D|1|2A|C|34
8G2D|1|2A|G|35
*
8G2D|1|2A|C|445
8G2D|1|2A|G|446
8G2D|1|2A|A|447
8G2D|1|2A|U|448
8G2D|1|2A|A|449
8G2D|1|2A|G|450
8G2D|1|2A|C|451
8G2D|1|2A|G|452
8G2D|1|2A|C|453
8G2D|1|2A|A|454
8G2D|1|2A|C|455
8G2D|1|2A|C|456
8G2D|1|2A|A|457
8G2D|1|2A|G|458
8G2D|1|2A|U|459
8G2D|1|2A|A|460
8G2D|1|2A|C|461
*
8G2D|1|2A|G|468
8G2D|1|2A|G|469
8G2D|1|2A|A|470
8G2D|1|2A|A|471
8G2D|1|2A|A|472
8G2D|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23