J3_8G2U_019

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2U_019 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0617

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8G2U|1|B|G|30
8G2U|1|B|C|31
*
8G2U|1|B|G|474
8G2U|1|B|C|475
8G2U|1|B|G|476
8G2U|1|B|A|477
8G2U|1|B|A|478
8G2U|1|B|A|479
8G2U|1|B|A|480
8G2U|1|B|G|481
*
8G2U|1|B|C|509
8G2U|1|B|C|510

Current chains

Chain B

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24