J3_8G31_002

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8G31|1|B|U|686, 8G31|1|B|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G31_002 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3454

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8G31|1|B|U|683
8G31|1|B|G|684
8G31|1|B|A|685
8G31|1|B|U|686
8G31|1|B|C|687
8G31|1|B|U|688
8G31|1|B|A|689
*
8G31|1|B|U|773
8G31|1|B|G|774
8G31|1|B|G|775
*
8G31|1|B|C|791
8G31|1|B|A|792
8G31|1|B|A|793
8G31|1|B|A|794

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2