3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8G31|1|B|A|504, 8G31|1|B|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G31_017 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1306
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8G31|1|B|G|30
8G31|1|B|C|31
*
8G31|1|B|G|474
8G31|1|B|C|475
8G31|1|B|G|476
8G31|1|B|A|477
8G31|1|B|A|478
8G31|1|B|A|479
8G31|1|B|A|480
8G31|1|B|G|481
8G31|1|B|A|482
8G31|1|B|A|483
8G31|1|B|C|484
*
8G31|1|B|G|496
8G31|1|B|A|497
8G31|1|B|G|498
8G31|1|B|U|499
8G31|1|B|G|500
8G31|1|B|A|501
8G31|1|B|A|502
8G31|1|B|A|503
8G31|1|B|A|504
8G31|1|B|A|505
8G31|1|B|G|506
8G31|1|B|A|507
8G31|1|B|A|508
8G31|1|B|C|509
8G31|1|B|C|510

Current chains

Chain B
23S

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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