J3_8G31_018

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8G31|1|B|U|448, 8G31|1|B|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G31_018 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1078

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8G31|1|B|C|32
8G31|1|B|C|33
8G31|1|B|U|34
8G31|1|B|G|35
*
8G31|1|B|C|445
8G31|1|B|G|446
8G31|1|B|A|447
8G31|1|B|U|448
8G31|1|B|A|449
8G31|1|B|G|450
8G31|1|B|U|451
8G31|1|B|G|452
8G31|1|B|A|453
8G31|1|B|A|454
8G31|1|B|C|455
8G31|1|B|C|456
8G31|1|B|A|457
8G31|1|B|G|458
8G31|1|B|U|459
8G31|1|B|A|460
8G31|1|B|C|461
*
8G31|1|B|G|468
8G31|1|B|G|469
8G31|1|B|A|470
8G31|1|B|A|471
8G31|1|B|A|472
8G31|1|B|G|473

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23