3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G31_027 not in the Motif Atlas
Geometric match to J3_8C3A_082
Geometric discrepancy: 0.1981
The information below is about J3_8C3A_082
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.2
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

8G31|1|v|G|46
8G31|1|v|C|47
*
8G31|1|v|G|361
8G31|1|v|G|362
8G31|1|v|A|363
8G31|1|v|A|364
8G31|1|v|U|365
8G31|1|v|A|366
8G31|1|v|U|367
*
8G31|1|v|A|393
8G31|1|v|G|394
8G31|1|v|C|395

Current chains

Chain v
16S

Nearby chains

Chain k
30S ribosomal protein S12
Chain o
30S ribosomal protein S16

Coloring options:


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