3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8G31|1|v|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G31_031 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1114
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8G31|1|v|U|672
8G31|1|v|A|673
*
8G31|1|v|U|717
8G31|1|v|A|718
8G31|1|v|C|719
8G31|1|v|C|720
8G31|1|v|G|721
8G31|1|v|G|722
8G31|1|v|U|723
8G31|1|v|G|724
8G31|1|v|G|725
*
8G31|1|v|C|732
8G31|1|v|G|733
8G31|1|v|G|734

Current chains

Chain v
16S

Nearby chains

Chain e
30S ribosomal protein S6, non-modified isoform
Chain j
30S ribosomal protein S11
Chain n
30S ribosomal protein S15
Chain q
30S ribosomal protein S18
Chain t
30S ribosomal protein S21 (Fragment)

Coloring options:


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