J3_8G34_011

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8G34|1|v|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G34_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0807

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8G34|1|v|C|826
8G34|1|v|U|827
8G34|1|v|U|828
8G34|1|v|G|829
*
8G34|1|v|C|857
8G34|1|v|G|858
8G34|1|v|G|859
8G34|1|v|A|860
8G34|1|v|G|861
*
8G34|1|v|C|868
8G34|1|v|G|869
8G34|1|v|U|870
8G34|1|v|U|871
8G34|1|v|A|872
8G34|1|v|A|873
8G34|1|v|G|874

Current chains

Chain v

16S

Nearby chains

Chain g

30S ribosomal protein S8

Chain t

30S ribosomal protein S21 (Fragment)

Chain w

30S ribosomal protein S2