J3_8G34_033

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUGACAU*ACAG*CUUACG

Length

19 nucleotides

Bulged bases

8G34|1|v|U|991, 8G34|1|v|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G34_033 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2267

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8G34|1|v|U|989
8G34|1|v|C|990
8G34|1|v|U|991
8G34|1|v|U|992
8G34|1|v|G|993
8G34|1|v|A|994
8G34|1|v|C|995
8G34|1|v|A|996
8G34|1|v|U|997
*
8G34|1|v|A|1044
8G34|1|v|C|1045
8G34|1|v|A|1046
8G34|1|v|G|1047
*
8G34|1|v|C|1210
8G34|1|v|U|1211
8G34|1|v|U|1212
8G34|1|v|A|1213
8G34|1|v|C|1214
8G34|1|v|G|1215

Current chains

Chain v

16S

Nearby chains

Chain m

30S ribosomal protein S14