J3_8G38_011

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8G38|1|v|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.087

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8G38|1|v|C|826
8G38|1|v|U|827
8G38|1|v|U|828
8G38|1|v|G|829
*
8G38|1|v|C|857
8G38|1|v|G|858
8G38|1|v|G|859
8G38|1|v|A|860
8G38|1|v|G|861
*
8G38|1|v|C|868
8G38|1|v|G|869
8G38|1|v|U|870
8G38|1|v|U|871
8G38|1|v|A|872
8G38|1|v|A|873
8G38|1|v|G|874

Current chains

Chain v

16S

Nearby chains

Chain g

30S ribosomal protein S8

Chain t

30S ribosomal protein S21 (Fragment)

Chain w

30S ribosomal protein S2