J3_8G38_023

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_023 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0655

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G38|1|B|G|1424
8G38|1|B|G|1425
8G38|1|B|G|1426
8G38|1|B|A|1427
8G38|1|B|C|1428
8G38|1|B|G|1429
*
8G38|1|B|C|1564
8G38|1|B|C|1565
*
8G38|1|B|G|1568
8G38|1|B|A|1569
8G38|1|B|A|1570
8G38|1|B|A|1571
8G38|1|B|A|1572
8G38|1|B|G|1573
8G38|1|B|C|1574

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2