J3_8G38_029

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8G38|1|v|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_029 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0993

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G38|1|v|G|46
8G38|1|v|C|47
8G38|1|v|C|48
8G38|1|v|U|49
8G38|1|v|A|50
8G38|1|v|A|51
8G38|1|v|C|52
*
8G38|1|v|G|359
8G38|1|v|G|360
8G38|1|v|G|361
8G38|1|v|G|362
8G38|1|v|A|363
8G38|1|v|A|364
8G38|1|v|U|365
8G38|1|v|A|366
8G38|1|v|U|367
*
8G38|1|v|A|393
8G38|1|v|G|394
8G38|1|v|C|395

Current chains

Chain v

16S

Nearby chains

Chain k

30S ribosomal protein S12

Chain o

30S ribosomal protein S16