J3_8G38_034

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUGACAU*ACAG*CUUACG

Length

19 nucleotides

Bulged bases

8G38|1|v|U|991, 8G38|1|v|U|1212, 8G38|1|v|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_034 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.24

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8G38|1|v|U|989
8G38|1|v|C|990
8G38|1|v|U|991
8G38|1|v|U|992
8G38|1|v|G|993
8G38|1|v|A|994
8G38|1|v|C|995
8G38|1|v|A|996
8G38|1|v|U|997
*
8G38|1|v|A|1044
8G38|1|v|C|1045
8G38|1|v|A|1046
8G38|1|v|G|1047
*
8G38|1|v|C|1210
8G38|1|v|U|1211
8G38|1|v|U|1212
8G38|1|v|A|1213
8G38|1|v|C|1214
8G38|1|v|G|1215

Current chains

Chain v

16S

Nearby chains

Chain m

30S ribosomal protein S14