J3_8G4S_001

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGAG*CAG*CGUUGGAC

Length

15 nucleotides

Bulged bases

8G4S|1|2|G|559, 8G4S|1|2|U|560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G4S_001 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.3275

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8G4S|1|2|G|539
8G4S|1|2|G|540
8G4S|1|2|A|541
8G4S|1|2|G|542
*
8G4S|1|2|C|552
8G4S|1|2|A|553
8G4S|1|2|G|554
*
8G4S|1|2|C|558
8G4S|1|2|G|559
8G4S|1|2|U|560
8G4S|1|2|U|561
8G4S|1|2|G|562
8G4S|1|2|G|563
8G4S|1|2|A|564
8G4S|1|2|C|565

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

Ribosomal protein S9

Chain Y

Ribosomal protein S24