J3_8G4S_004
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CCAG*CUUGUAG*CGGACGCG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_004 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1678
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|C|902
8G4S|1|2|C|903
8G4S|1|2|A|904
8G4S|1|2|G|905
*
8G4S|1|2|C|1266
8G4S|1|2|U|1267
8G4S|1|2|U|1268
8G4S|1|2|G|1269
8G4S|1|2|U|1270
8G4S|1|2|A|1271
8G4S|1|2|G|1272
*
8G4S|1|2|C|1294
8G4S|1|2|G|1295
8G4S|1|2|G|1296
8G4S|1|2|A|1297
8G4S|1|2|C|1298
8G4S|1|2|G|1299
8G4S|1|2|C|1300
8G4S|1|2|G|1301
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain Q
- Ribosomal protein S16
- Chain c
- Ribosomal protein S28
- Chain g
- Transfer RNA; tRNA
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