J3_8G4S_005
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_005 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1318
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8G4S|1|2|U|909
8G4S|1|2|G|910
8G4S|1|2|G|911
8G4S|1|2|A|912
*
8G4S|1|2|U|1171
8G4S|1|2|A|1172
8G4S|1|2|C|1173
*
8G4S|1|2|G|1259
8G4S|1|2|G|1260
8G4S|1|2|A|1261
8G4S|1|2|A|1262
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain Q
- Ribosomal protein S16
- Chain S
- Ribosomal protein S18
- Chain T
- SSU ribosomal protein S19E (Fragment)
- Chain g
- Transfer RNA; tRNA
- Chain h
- Transfer RNA; tRNA
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