J3_8G4S_006
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CUCAAUCU*GCGCACCUCAC*GGCCG
- Length
- 24 nucleotides
- Bulged bases
- 8G4S|1|2|C|940, 8G4S|1|2|G|941
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_006 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.5143
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|C|921
8G4S|1|2|U|922
8G4S|1|2|C|923
8G4S|1|2|A|924
8G4S|1|2|A|925
8G4S|1|2|U|926
8G4S|1|2|C|927
8G4S|1|2|U|928
*
8G4S|1|2|G|939
8G4S|1|2|C|940
8G4S|1|2|G|941
8G4S|1|2|C|942
8G4S|1|2|A|943
8G4S|1|2|C|944
8G4S|1|2|C|945
8G4S|1|2|U|946
8G4S|1|2|C|947
8G4S|1|2|A|948
8G4S|1|2|C|949
*
8G4S|1|2|G|1157
8G4S|1|2|G|1158
8G4S|1|2|C|1159
8G4S|1|2|C|1160
8G4S|1|2|G|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- Ribosomal protein S10B
- Chain P
- Ribosomal protein S15
- Chain S
- Ribosomal protein S18
- Chain U
- Ribosomal protein S20
- Chain d
- Ribosomal protein S29A
- Chain i
- Transfer RNA; tRNA
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