J3_8G4S_007

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCGGAC*GGGCG*UCAGACG

Length

18 nucleotides

Bulged bases

8G4S|1|2|G|957, 8G4S|1|2|G|1148, 8G4S|1|2|C|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G4S_007 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1852

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8G4S|1|2|C|955
8G4S|1|2|C|956
8G4S|1|2|G|957
8G4S|1|2|G|958
8G4S|1|2|A|959
8G4S|1|2|C|960
*
8G4S|1|2|G|1002
8G4S|1|2|G|1003
8G4S|1|2|G|1004
8G4S|1|2|C|1005
8G4S|1|2|G|1006
*
8G4S|1|2|U|1145
8G4S|1|2|C|1146
8G4S|1|2|A|1147
8G4S|1|2|G|1148
8G4S|1|2|A|1149
8G4S|1|2|C|1150
8G4S|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

Ribosomal protein S10B

Chain d

Ribosomal protein S29A

Chain f

Ribosomal protein S27a