J3_8G4S_010
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CACUG*CGUGGCCG*CCAG
- Length
- 17 nucleotides
- Bulged bases
- 8G4S|1|2|U|1176, 8G4S|1|2|C|1226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_010 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1861
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|C|1173
8G4S|1|2|A|1174
8G4S|1|2|C|1175
8G4S|1|2|U|1176
8G4S|1|2|G|1177
*
8G4S|1|2|C|1220
8G4S|1|2|G|1221
8G4S|1|2|U|1222
8G4S|1|2|G|1223
8G4S|1|2|G|1224
8G4S|1|2|C|1225
8G4S|1|2|C|1226
8G4S|1|2|G|1227
*
8G4S|1|2|C|1256
8G4S|1|2|C|1257
8G4S|1|2|A|1258
8G4S|1|2|G|1259
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain S
- Ribosomal protein S18
- Chain T
- SSU ribosomal protein S19E (Fragment)
- Chain Z
- 40S ribosomal protein S25
- Chain g
- Transfer RNA; tRNA
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