J3_8G5Z_005

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8G5Z|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G5Z_005 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0786

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8G5Z|1|L5|C|2393
8G5Z|1|L5|G|2394
8G5Z|1|L5|A|2395
8G5Z|1|L5|A|2396
8G5Z|1|L5|G|2397
8G5Z|1|L5|U|2398
8G5Z|1|L5|G|2399
*
8G5Z|1|L5|C|2805
8G5Z|1|L5|A|2806
8G5Z|1|L5|A|2807
*
8G5Z|1|L5|U|2819
8G5Z|1|L5|C|2820
8G5Z|1|L5|U|2821
8G5Z|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34