J3_8G60_015

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G60_015 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.204

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8G60|1|S2|A|816
8G60|1|S2|G|817
8G60|1|S2|A|818
8G60|1|S2|G|819
*
8G60|1|S2|C|829
8G60|1|S2|A|830
8G60|1|S2|G|831
*
8G60|1|S2|C|843
8G60|1|S2|U|844
8G60|1|S2|G|845
8G60|1|S2|G|846
8G60|1|S2|A|847
8G60|1|S2|U|848

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

eS4

Chain SJ

uS4

Chain SY

eS24