3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUU(A2M)AG
Length
19 nucleotides
Bulged bases
8G60|1|S2|A|1679
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G60_018 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1036
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8G60|1|S2|C|1218
8G60|1|S2|C|1219
8G60|1|S2|A|1220
8G60|1|S2|G|1221
*
8G60|1|S2|C|1645
8G60|1|S2|C|1646
8G60|1|S2|A|1647
8G60|1|S2|G|1648
8G60|1|S2|U|1649
8G60|1|S2|A|1650
8G60|1|S2|A|1651
*
8G60|1|S2|U|1673
8G60|1|S2|G|1674
8G60|1|S2|A|1675
8G60|1|S2|U|1676
8G60|1|S2|U|1677
8G60|1|S2|A2M|1678
8G60|1|S2|A|1679
8G60|1|S2|G|1680

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SF
uS7
Chain SQ
uS9
Chain Sc
eS28

Coloring options:


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