J3_8G60_038

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

8G60|1|L5|A|4464, 8G60|1|L5|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G60_038 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1639

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8G60|1|L5|U|4463
8G60|1|L5|A|4464
8G60|1|L5|U|4465
8G60|1|L5|C|4466
*
8G60|1|L5|G|4491
8G60|1|L5|U|4492
8G60|1|L5|PSU|4493
*
8G60|1|L5|A|4507
8G60|1|L5|C|4508
8G60|1|L5|U|4509
8G60|1|L5|A|4510
8G60|1|L5|A|4511
8G60|1|L5|U|4512
8G60|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LV

uL14